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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94278206_94289316_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94278206 - 94289316
Intron Length:
11111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATGTTTTAAGT
Flanking Amino Acid:
ASAQPVLHQSDSPSSVVNKQ
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
73.3
37.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
29.9
-2.3
3
37.4
41.2
Minor BPS
60
0.39
1.7
75.92
41.3

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024651
94244238 - 94325410
81173