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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94291263_94295252_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94291263 - 94295252
Intron Length:
3990

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
VPSAEERREELRQPPVKRLR
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.3
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.1
0.65
0.9
74.8
39.7
Minor 5ss
24
-3
4
39.6
46.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040046
94244238 - 94325410
81173
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000044418
94244238 - 94325410
81173
ENSAPLT00000005181
94243901 - 94325410
81510
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000042304
94244238 - 94325410
81173