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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94297559_94298553_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94297559 - 94298553
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAGTG
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
ATTGTCTGAATG
Flanking Amino Acid:
TSCTKEDCKDDILINCRRAA
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.9
38
Major BPS
62
0.3
1.4
71.9
41
Major PPT
84.3
0.77
0.9
76.9
42.1
Minor 5ss
36.5
-1.5
3.6
52
44.9
Minor BPS
56.4
0.06
1.6
61.99
40.4

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000044418
94244238 - 94325410
81173
ENSAPLT00000005181
94243901 - 94325410
81510
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000042304
94244238 - 94325410
81173
ENSAPLT00000040046
94244238 - 94325410
81173