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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94298668_94303078_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94298668 - 94303078
Intron Length:
4411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTTAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTGATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTGATCA
Flanking Amino Acid:
YTCHYGTTYEIMTVPNDPYT
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
69.5
38.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.9
0.7
0.9
82.2
34.2
Minor 5ss
45
-0.5
2.9
61.2
43.7
Minor BPS
65.4
0.48
1.7
79.93
36

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005181
94243901 - 94325410
81510
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000042304
94244238 - 94325410
81173
ENSAPLT00000040046
94244238 - 94325410
81173
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000044418
94244238 - 94325410
81173