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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94326058_94327840_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94326058 - 94327840
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
AGTAACTTCACC
Flanking Amino Acid:
RLRPFYNHPAGPKTVFFWAP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
60.3
40.5
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
83.1
0.74
0.7
81.4
23.6
Minor 5ss
35.6
-1.6
3.5
42.4
44.7
Minor BPS
49.7
-0
2
63.76
41.1

Associated Gene:

Gene:
MPC2
Ensembl Gene ID:
ENSAPLG00000005444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005628
94325952 - 94331590
5639