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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94327882_94329630_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94327882 - 94329630
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TTTCTCTTTACA
Flanking Amino Acid:
VFFWAPIMKWGLVCAGMADM
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
92.5
0.96
0.6
87.6
22.6
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
69.4
0.6
1.6
80.69
34.2

Associated Gene:

Gene:
MPC2
Ensembl Gene ID:
ENSAPLG00000005444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005628
94325952 - 94331590
5639