About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94329716_94330768_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94329716 - 94330768
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
TTTCGTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATCATTTAAAC
Flanking Amino Acid:
TAQSAVLMATGLIWSRYSLV
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.8
0.63
0.9
73.6
35.7
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
57.6
0.22
1.6
67.78
36.8

Associated Gene:

Gene:
MPC2
Ensembl Gene ID:
ENSAPLG00000005444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005628
94325952 - 94331590
5639