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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94330881_94331532_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94330881 - 94331532
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CTATCCTCAATC
Flanking Amino Acid:
AGGSQLFRIWRYNQELKAKQ
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
89.1
0.88
0.6
84.2
24
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
66.5
0.5
1.5
71.53
39.9

Associated Gene:

Gene:
MPC2
Ensembl Gene ID:
ENSAPLG00000005444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005628
94325952 - 94331590
5639