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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9440260_9497923_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9440260 - 9497923

Intron Length:

57664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTCCC

5'SS Class:

major

3'SS Sequence:

TTGGTTTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTCTCTTTCTCT

Flanking Amino Acid:

SSEGPFPSPTTIKSWVDKMQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.3

69.7

41.3

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

79.2

0.66

0.8

77.9

36.6

Minor 5ss

36.9

-1.5

2.9

45.4

35.3

Minor BPS

45.1

-0.2

3.6

79.06

43.7

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003267

9440165 - 9838495

398331

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147