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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94420613_94421234_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
94420613 - 94421234
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTACTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTATTCTTACTC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.8
39.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79
0.65
0.8
74.1
30.7
Minor 5ss
37.9
-1.4
2.7
45.6
37
Minor BPS
66.4
0.5
1.6
74.44
36.6

Associated Gene:

Gene:
CREG1
Ensembl Gene ID:
ENSAPLG00000005711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005895
94415683 - 94421235
5553