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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94482908_94484381_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94482908 - 94484381
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
AACACCTCACCT
Flanking Amino Acid:
RGKGNDGVYQGLSTATKDTY
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
48.6
-0
1.9
64.84
45

Associated Gene:

Gene:
CD247
Ensembl Gene ID:
ENSAPLG00000005778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043020
94433153 - 94485369
52217