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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94498890_94499699_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94498890 - 94499699
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTTCTTCCATG
Flanking Amino Acid:
GLMASSQFAAGGALLSLNPG
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
65
0.37
1.3
76.1
38
Major PPT
82.8
0.74
0.8
77.6
31.2
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
48.5
-0.2
2
58.73
44

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018419
94497050 - 94542419
45370
ENSAPLT00000034796
94497050 - 94574591
77542
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000030233
94497050 - 94542419
45370
ENSAPLT00000048210
94497050 - 94542419
45370
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000045765
94497275 - 94547096
49822
ENSAPLT00000020408
94497275 - 94542419
45145
ENSAPLT00000043882
94497050 - 94542419
45370