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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94503791_94504737_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94503791 - 94504737
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGCTTTTCAAGT
Flanking Amino Acid:
RVALEKSFLENQKPTSEEIT
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
32.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.8
0.85
0.6
87.4
22.9
Minor 5ss
29.8
-2.3
3.1
40.6
45.6
Minor BPS
47.9
-0
1.8
62.38
42.1

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018419
94497050 - 94542419
45370
ENSAPLT00000034796
94497050 - 94574591
77542
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000030233
94497050 - 94542419
45370
ENSAPLT00000048210
94497050 - 94542419
45370
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000045765
94497275 - 94547096
49822
ENSAPLT00000020408
94497275 - 94542419
45145
ENSAPLT00000043882
94497050 - 94542419
45370