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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94504884_94507062_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94504884 - 94507062
Intron Length:
2179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGTGTTAACT
Flanking Amino Acid:
PLLEKWLNDAENLSSDSTLS
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
70.8
35
Major BPS
77.3
0.68
1
81.5
27
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
25.9
-2.8
3
30.5
43.3
Minor BPS
64.4
0.53
2.1
86.99
39.2

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048210
94497050 - 94542419
45370
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000030233
94497050 - 94542419
45370
ENSAPLT00000045765
94497275 - 94547096
49822
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000020408
94497275 - 94542419
45145
ENSAPLT00000043882
94497050 - 94542419
45370
ENSAPLT00000018419
94497050 - 94542419
45370
ENSAPLT00000034796
94497050 - 94574591
77542