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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94507205_94510908_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94507205 - 94510908
Intron Length:
3704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TGTTAGTGAATC
Flanking Amino Acid:
QRRIKLGFTQGDVGLAMGKL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
86.5
0.82
0.8
80.5
37
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
47.5
-0.2
2.3
65.19
40.2

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020408
94497275 - 94542419
45145
ENSAPLT00000043882
94497050 - 94542419
45370
ENSAPLT00000018419
94497050 - 94542419
45370
ENSAPLT00000034796
94497050 - 94574591
77542
ENSAPLT00000048210
94497050 - 94542419
45370
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000030233
94497050 - 94542419
45370
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000045765
94497275 - 94547096
49822