About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94511083_94513441_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94511083 - 94513441
Intron Length:
2359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGCTT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTGTCTTAATA
Flanking Amino Acid:
SQPSITLASQPATPTRTIAA
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
73.4
43.3
Major BPS
100
1.24
0.5
100
0
Major PPT
73.4
0.53
0.9
69.8
35.4
Minor 5ss
32.1
-2
3.4
47.7
47.8
Minor BPS
70.7
0.65
1.3
74.1
38.6

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000045765
94497275 - 94547096
49822
ENSAPLT00000020408
94497275 - 94542419
45145
ENSAPLT00000043882
94497050 - 94542419
45370
ENSAPLT00000018419
94497050 - 94542419
45370
ENSAPLT00000034796
94497050 - 94574591
77542
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000030233
94497050 - 94542419
45370