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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94523201_94532501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94523201 - 94532501
Intron Length:
9301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TAAGGATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GTTTCCTTAAGG
Flanking Amino Acid:
QAAAQSLNVQHLQQLQQQNL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
67.3
0.39
1.1
58.8
45.9
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
73.9
0.61
1.7
76.24
41.3

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020408
94497275 - 94542419
45145