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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94529052_94530749_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94529052 - 94530749
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TAATTATTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTTCTAATT
Flanking Amino Acid:
LMLAGGQITGLTLTPAQQQL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
70.1
40
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
63.3
0.5
1.6
80.73
35.2

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027475
94518693 - 94574562
55870
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000048210
94497050 - 94542419
45370
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000043882
94497050 - 94542419
45370
ENSAPLT00000034796
94497050 - 94574591
77542