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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94529052_94532501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94529052 - 94532501
Intron Length:
3450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TAATTATTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTTCTAATT
Flanking Amino Acid:
QAAAQSLNVQLTLTPAQQQL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
70.1
40
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
63.3
0.5
1.6
80.73
35.2

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018419
94497050 - 94542419
45370