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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94530870_94532501_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94530870 - 94532501
Intron Length:
1632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TCTGTTTTACAC
Flanking Amino Acid:
QAAAQSLNVQSKSNEESGDS
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
72.8
0.57
1
81
30.3
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
47.8
-0.1
1.8
57.98
41.7

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000043882
94497050 - 94542419
45370
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000034796
94497050 - 94574591
77542
ENSAPLT00000030233
94497050 - 94542419
45370
ENSAPLT00000027475
94518693 - 94574562
55870
ENSAPLT00000048210
94497050 - 94542419
45370