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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94532556_94535377_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94532556 - 94535377
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAA
U12 Branch Point Sequence:
CATTACTTCACT
Flanking Amino Acid:
AQAFLGHLHQVQLAGTSLQA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
65.2
0.38
1.2
69.6
37.5
Major PPT
67.5
0.39
1
61.1
39.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
59.8
0.39
2
78.13
43.8

Associated Gene:

Gene:
POU2F1
Ensembl Gene ID:
ENSAPLG00000005929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020408
94497275 - 94542419
45145
ENSAPLT00000034796
94497050 - 94574591
77542
ENSAPLT00000018419
94497050 - 94542419
45370
ENSAPLT00000030233
94497050 - 94542419
45370
ENSAPLT00000006227
94497050 - 94547096
50047
ENSAPLT00000027475
94518693 - 94574562
55870
ENSAPLT00000048210
94497050 - 94542419
45370
ENSAPLT00000025603
94497275 - 94555164
57890
ENSAPLT00000043882
94497050 - 94542419
45370