Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

94535479 - 94542262

Intron Length:

6784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCATAT

U12 Branch Point Sequence:

TAGTTCATATCT

Flanking Amino Acid:

PSMESGDGNTGTQTNGLDFQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

74.2

0.6

69.3

38.4

Major PPT

88.7

0.87

0.7

81.3

30.8

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

53.2

0.18

1.9

73.73

42.9

Associated Gene:

Gene:

POU2F1

Ensembl Gene ID:

ENSAPLG00000005929

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020408

94497275 - 94542419

45145

ENSAPLT00000034796

94497050 - 94574591

77542

ENSAPLT00000018419

94497050 - 94542419

45370

ENSAPLT00000030233

94497050 - 94542419

45370

ENSAPLT00000048210

94497050 - 94542419

45370

ENSAPLT00000006227

94497050 - 94547096

50047

ENSAPLT00000027475

94518693 - 94574562

55870

ENSAPLT00000045765

94497275 - 94547096

49822

ENSAPLT00000025603

94497275 - 94555164

57890

ENSAPLT00000043882

94497050 - 94542419

45370

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94535479_94542262_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: