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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94636145_94636713_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94636145 - 94636713
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CAATTTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTGTTACAT
Flanking Amino Acid:
AVAAKQIINEELKTKDIKVD
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.6
0.58
1
66.5
43.5
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
50.9
0.11
2.4
80.39
41.7

Associated Gene:

Gene:
DUSP27
Ensembl Gene ID:
ENSAPLG00000006438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006671
94629968 - 94639038
9071