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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94648215_94650521_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94648215 - 94650521
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTCCTGACTG
Flanking Amino Acid:
HEPRVLQTTKGEQITLKNIS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72.7
0.51
1
67.7
37.7
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
62.5
0.25
1.8
72.16
41

Associated Gene:

Gene:
GPA33
Ensembl Gene ID:
ENSAPLG00000006451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006692
94641598 - 94654866
13269