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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94650636_94653463_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94650636 - 94653463
Intron Length:
2828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGAGAC
5'SS Class:
major
3'SS Sequence:
TCCTCCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TCCTCCTTTATA
Flanking Amino Acid:
SCNMTVSVVPPSMNIALYAG
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.3
69.5
35.6
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
80.8
0.69
0.7
75.8
26.4
Minor 5ss
32.1
-2
3.4
40.9
39
Minor BPS
65.7
0.49
1.6
70.75
41.8

Associated Gene:

Gene:
GPA33
Ensembl Gene ID:
ENSAPLG00000006451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006692
94641598 - 94654866
13269