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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94653588_94654215_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94653588 - 94654215
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
AATAATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TATTCCTGAATA
Flanking Amino Acid:
RGDKNTDYEMTETKDADEFS
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
64
0.31
1
59.3
45.9
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
76.4
0.83
1.3
81.89
32.7

Associated Gene:

Gene:
GPA33
Ensembl Gene ID:
ENSAPLG00000006451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006692
94641598 - 94654866
13269