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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94662841_94663628_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94662841 - 94663628
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTAATTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATT
Flanking Amino Acid:
SQDQEHVPSSCDSPCDVKTS
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
69.6
37.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
0.9
70.3
39.7
Minor 5ss
40.9
-1
3
55.1
43.4
Minor BPS
71.8
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
MAEL
Ensembl Gene ID:
ENSAPLG00000006696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006967
94662725 - 94674153
11429