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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94666957_94667946_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94666957 - 94667946
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGTCA
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
ACTTCTTGAAAG
Flanking Amino Acid:
GGGWPRFFCRADDRFRVTWC
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
61.9
39.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
87
0.83
0.6
81.2
30.9
Minor 5ss
42.7
-0.8
3
47.6
48
Minor BPS
55.9
0.05
1.6
59.89
41.8

Associated Gene:

Gene:
MAEL
Ensembl Gene ID:
ENSAPLG00000006696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006967
94662725 - 94674153
11429