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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94668707_94669220_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94668707 - 94669220
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
CCTCCCTTATGC
Flanking Amino Acid:
MADFHHFIDPEVPPRGFRYH
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
73.8
30.8
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
85.3
0.8
0.8
80.6
31.4
Minor 5ss
36.1
-1.6
2.8
45.2
42.8
Minor BPS
49.3
-0
2
59.18
45.9

Associated Gene:

Gene:
MAEL
Ensembl Gene ID:
ENSAPLG00000006696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006967
94662725 - 94674153
11429