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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94671272_94673297_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94671272 - 94673297
Intron Length:
2026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGATTTTTAATT
Flanking Amino Acid:
KKKSQKTKKEMPNLDQPAPS
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.9
0.9
0.7
88.6
28.1
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
73.2
0.81
1.1
80.88
34.9

Associated Gene:

Gene:
MAEL
Ensembl Gene ID:
ENSAPLG00000006696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006967
94662725 - 94674153
11429