About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94673382_94674021_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94673382 - 94674021
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
GCTTTCTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AACTTCTTAATA
Flanking Amino Acid:
AIPHCAKDWALLTEEEKMAY
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
57.8
41.3
Major BPS
80
0.75
1
78.6
31
Major PPT
73.6
0.53
1
71.4
38.7
Minor 5ss
24.6
-2.9
3.3
30.6
42.7
Minor BPS
71.1
0.66
1.2
70.3
36.1

Associated Gene:

Gene:
MAEL
Ensembl Gene ID:
ENSAPLG00000006696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006967
94662725 - 94674153
11429