About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94713914_94714848_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94713914 - 94714848
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGGCCTCTAACC
Flanking Amino Acid:
YRDERDSFRHSQQRSKSEML
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
85.8
0.8
0.7
77.7
31
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
55.7
0.16
1.7
65.46
39.8

Associated Gene:

Gene:
ILDR2
Ensembl Gene ID:
ENSAPLG00000006916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040589
94684296 - 94715563
31268
ENSAPLT00000007187
94684296 - 94716085
31790