About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94742740_94743878_F

Intron Information:

Intron Rank:
132277
Intron Class:
major
Intron Phase:
Intron Coordinates:
94742740 - 94743878
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAGTTATGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
40.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
83.5
0.75
0.7
81.7
23.3
Minor 5ss
35.8
-1.6
2.8
39.3
39.7
Minor BPS
47.2
-0.1
1.9
67.21
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021068
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041665
94740450 - 94748914
8465
ENSAPLT00000039544
94740519 - 94748914
8396