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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94745235_94746496_F

Intron Information:

Intron Rank:
132279
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
94745235 - 94746496
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTCCTGGTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTAACTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
55.4
0.12
1.1
54.9
40.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
72.7
0.8
1.5
89.57
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021068
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039544
94740519 - 94748914
8396