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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94805811_94807640_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94805811 - 94807640
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCACTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
GTTTGTTCCACT
Flanking Amino Acid:
KKKTERLEDDAAGQSASDSG
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
66.2
0.37
1.1
65.8
34.9
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
46.8
-0.1
2.3
72.55
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045529
94783856 - 94808011
24156