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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94807677_94807802_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94807677 - 94807802
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAG
U12 Branch Point Sequence:
AGGTGCCTGACT
Flanking Amino Acid:
GQSASDSGLPDEERTMQIRK
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
48.4
-0.1
1.5
45
39.9
Major PPT
75.3
0.57
0.9
68.4
37.3
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
47.8
-0
2.1
67.01
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045529
94783856 - 94808011
24156