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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94877449_94878251_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94877449 - 94878251
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
GNYDAEVQVKVISDGLWVSG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.4
0.66
0.9
78.4
33.9
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
PTGFRN
Ensembl Gene ID:
ENSAPLG00000007051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007330
94849978 - 94911632
61655