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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94878672_94881233_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94878672 - 94881233
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTGTTTGAATT
Flanking Amino Acid:
EIASVSIQRTVLDVLISTSN
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
68.8
0.42
1
67
38
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
62.5
0.47
1.5
79.72
37

Associated Gene:

Gene:
PTGFRN
Ensembl Gene ID:
ENSAPLG00000007051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007330
94849978 - 94911632
61655