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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94886183_94892828_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94886183 - 94892828
Intron Length:
6646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGTTGCTTATTT
Flanking Amino Acid:
APVSILWATQDYTLTVEAVK
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.5
37.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81.1
0.7
0.7
77.6
24.3
Minor 5ss
33.3
-1.9
3.1
43.9
43.5
Minor BPS
59.8
0.39
2
80.47
41.8

Associated Gene:

Gene:
PTGFRN
Ensembl Gene ID:
ENSAPLG00000007051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007330
94849978 - 94911632
61655