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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94910210_94911465_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94910210 - 94911465
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TATCTAACAACT
Flanking Amino Acid:
KPVFLSVKMDVLNAFKYPLL
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
45.9
-0.2
2
69.52
40.4

Associated Gene:

Gene:
PTGFRN
Ensembl Gene ID:
ENSAPLG00000007051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007330
94849978 - 94911632
61655