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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94922116_94922882_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94922116 - 94922882
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TCTCTGCCAACA
Flanking Amino Acid:
ALLLVLFLLLGVGAGQRVVT
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
71.3
0.48
0.9
66
34.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
41.5
-0.6
2.3
57.29
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007379
94921590 - 94933414
11825