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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94923261_94923741_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94923261 - 94923741
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CCCTTGTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
TGCTTCTCCCCT
Flanking Amino Acid:
GSYSAKTNLSVIPDTLSVSM
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
60.1
0.25
1
51
35.6
Major PPT
67.6
0.4
1
59.8
40.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
36.7
-0.9
3.6
63.97
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007379
94921590 - 94933414
11825