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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94925401_94926237_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94925401 - 94926237
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTCAG
5'SS Class:
major
3'SS Sequence:
TCCTCTTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCTGCCCTAACA
Flanking Amino Acid:
SAVTVDVKLIGLGLQATLIS
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.3
68.8
43.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
71.7
0.49
1
69.2
35.6
Minor 5ss
29
-2.4
2.6
32.3
42.2
Minor BPS
64.9
0.46
1.8
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007379
94921590 - 94933414
11825