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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9498006_9514891_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9498006 - 9514891
Intron Length:
16886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTATTTCAATT
Flanking Amino Acid:
TASGVDQLAAIYLKYRDLYT
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.1
42.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
34.6
-1.7
2.8
41
45.3
Minor BPS
62.7
0.48
1.5
80.28
35.9

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000022965
9440165 - 9841561
401397
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000019885
9440165 - 9838362
398198