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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95040770_95041047_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95040770 - 95041047
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
TCTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
CTCTCCTCTCCT
Flanking Amino Acid:
LASRGLKPKEGLASAQRHVA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
39.3
-0.7
3.6
68.05
48.4

Associated Gene:

Gene:
IGSF3
Ensembl Gene ID:
ENSAPLG00000007123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039951
95040685 - 95094834
54150