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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95069767_95071446_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95069767 - 95071446
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
GTTTCTCTCCTT
Flanking Amino Acid:
KNIPITVLPLKTSISLEIIN
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
82
0.72
0.6
81.6
23.3
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
37.2
-0.8
3.6
68.74
42.8

Associated Gene:

Gene:
IGSF3
Ensembl Gene ID:
ENSAPLG00000007123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039951
95040685 - 95094834
54150
ENSAPLT00000039703
95017293 - 95094834
77542
ENSAPLT00000007392
95017293 - 95094834
77542