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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95071849_95076427_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95071849 - 95076427
Intron Length:
4579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGCTCTTTAAAG
Flanking Amino Acid:
AGTPVSITPLEAGFAVTAIS
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
91.2
0.93
0.6
87.3
23.1
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
65.6
0.35
1.5
65.2
42.6

Associated Gene:

Gene:
IGSF3
Ensembl Gene ID:
ENSAPLG00000007123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039703
95017293 - 95094834
77542
ENSAPLT00000007392
95017293 - 95094834
77542
ENSAPLT00000039951
95040685 - 95094834
54150