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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95076833_95088990_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95076833 - 95088990
Intron Length:
12158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCTTCTCACCT
Flanking Amino Acid:
NLLEIRVLRPVTKLQVSKSK
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
69.7
0.44
0.9
65.6
30.4
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
52.2
0.15
1.9
71.07
46.1

Associated Gene:

Gene:
IGSF3
Ensembl Gene ID:
ENSAPLG00000007123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039951
95040685 - 95094834
54150
ENSAPLT00000039703
95017293 - 95094834
77542
ENSAPLT00000007392
95017293 - 95094834
77542