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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95089005_95089079_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95089005 - 95089079
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCAAATCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCAAAT
U12 Branch Point Sequence:
TCCCGCTCAACT
Flanking Amino Acid:
RVLRPVTKLQTSPDSHFAVL
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
59.5
0.24
1.2
67.3
37.8
Major PPT
66.9
0.38
1
59.3
40.4
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
50
0.08
2
69.41
47.1

Associated Gene:

Gene:
IGSF3
Ensembl Gene ID:
ENSAPLG00000007123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039951
95040685 - 95094834
54150