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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95091039_95091239_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95091039 - 95091239
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGGGCCTCTACC
Flanking Amino Acid:
ENQWVTLECQNATVRDSGVY
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
71.7
0.49
0.9
62.4
38.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
48.1
-0.1
2
59.72
45.2

Associated Gene:

Gene:
IGSF3
Ensembl Gene ID:
ENSAPLG00000007123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039703
95017293 - 95094834
77542